Data and Software at AIND¶

Software Overview

Overview¶

Data and Software at AIND encompasses all systems from data generation in the lab to storage and analysis. The system is organized into four main components:

Lab Management System
Data Acquisition
Data Staging
Data Storage and Processing

The docs listed below direct to more detailed information based on what you want to accomplish with AIND data.

I want to…¶

Acquire, upload & process data in the Cloud.

Explore, QC & analyze my data assets.

Publish data and software tools

Propose a project with data and software support.

Developer templates for new packages and tools.

I need to report an…¶

Issue with scientific computing software.

Issue with SIPE instrumentation.

I need an account…¶

Follow these links to request access to:

Code Ocean
Hortacloud
AllenNeuralDynamics GitHub - via ServiceNow, ask for access to the AllenNeuralDynamics GitHub organization
GitHub Copilot - via ServiceNow
VAST /allen/aind/scratch and /allen/aind/stage - via ServiceNow

I want to learn about…¶

Data organization, data governance, software practices, or visualize how our software and systems interact.